Package: pedigreemm 0.3-4
pedigreemm: Pedigree-Based Mixed-Effects Models
Fit pedigree-based mixed-effects models.
Authors:
pedigreemm_0.3-4.tar.gz
pedigreemm_0.3-4.zip(r-4.5)pedigreemm_0.3-4.zip(r-4.4)pedigreemm_0.3-4.zip(r-4.3)
pedigreemm_0.3-4.tgz(r-4.4-x86_64)pedigreemm_0.3-4.tgz(r-4.4-arm64)pedigreemm_0.3-4.tgz(r-4.3-x86_64)pedigreemm_0.3-4.tgz(r-4.3-arm64)
pedigreemm_0.3-4.tar.gz(r-4.5-noble)pedigreemm_0.3-4.tar.gz(r-4.4-noble)
pedigreemm_0.3-4.tgz(r-4.4-emscripten)pedigreemm_0.3-4.tgz(r-4.3-emscripten)
pedigreemm.pdf |pedigreemm.html✨
pedigreemm/json (API)
| # Install 'pedigreemm' in R: |
| install.packages('pedigreemm', repos = c('https://anainesvs.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/anainesvs/pedigreemm/issues
Last updated 10 months agofrom:d848ac51cc. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 23 2024 |
| R-4.5-win-x86_64 | OK | Aug 23 2024 |
| R-4.5-linux-x86_64 | OK | Aug 23 2024 |
| R-4.4-win-x86_64 | OK | Aug 23 2024 |
| R-4.4-mac-x86_64 | OK | Aug 23 2024 |
| R-4.4-mac-aarch64 | OK | Aug 23 2024 |
| R-4.3-win-x86_64 | OK | Aug 23 2024 |
| R-4.3-mac-x86_64 | OK | Aug 23 2024 |
| R-4.3-mac-aarch64 | OK | Aug 23 2024 |
Exports:coerceDmateditPedfittedgetAgetAInvheadinbreedingpedigreepedigreemmranefrelfactorresidualsshowtail
Dependencies:bootlatticelme4MASSMatrixminqanlmenloptrRcppRcppEigen
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| vector of the diagonal for the D matrix from the decomposition A= TDT' | Dmat |
| Complete and Order a Pedigree | editPed |
| Additive Relationship Matrix | getA |
| Inverse of the relationship matrix | getAInv |
| Inbreeding coefficients from a pedigree... | inbreeding |
| Mastitis cases in dairy cattle | mastitis |
| Milk production | milk |
| Pedigree of the cows in milk | pedCows |
| Pedigree of the cows in milk with 0.70 of the information in pedCows | pedCowsR |
| Pedigree Constructor | pedigree |
| Class "pedigree" | coerce,pedigree,data.frame-method coerce,pedigree,sparseMatrix-method head,pedigree-method pedigree-class pedinbred-class show,pedigree-method tail,pedigree-method |
| Fit mixed-effects models incorporating pedigrees | pedigreemm |
| Pedigree-based mixed-effects model fits | fitted,pedigreemm-method pedigreemm-class ranef,pedigreemm-method residuals,pedigreemm-method |
| Pedigree of the sires from mastitis | pedSires |
| Relationship factor from a pedigree... | relfactor |
